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cdna microarray profiling illumina ht-12 v3  (Illumina Inc)


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    Illumina Inc cdna microarray profiling illumina ht-12 v3
    Cdna Microarray Profiling Illumina Ht 12 V3, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cdna+microarray/illumina+arrays/pm39449073-215-14-18
    Average 90 stars, based on 1 article reviews
    cdna microarray profiling illumina ht-12 v3 - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: Identifying MicroRNA and mRNA expression profiles in embryonic stem cells derived from parthenogenetic, androgenetic and fertilized blastocysts.
    Article Snippet: MicroRNAs (miRNAs) are a class of highly conserved small non-coding RNA molecules that play a pivotal role in several cellular functions.. In this study, miRNA and messenger RNA (mRNA) profiles were examined by Illumina microarray in mouse embryonic stem cells (ESCs) derived from parthenogenetic, androgenetic, and fertilized blastocysts.. The global analysis of miRNA-mRNA target pairs provided insight into the role of miRNAs in gene expression.

    Article Title: Transcriptional signature of human adipose tissue-derived stem cells (hASCs) preconditioned for chondrogenesis in hypoxic conditions.
    Article Snippet: L. Pilgaard, P. Lund, M. Duroux, H. Lockstone, J. Taylor, J. Emmersen, T. Fink, J. Ragoussis, V. Zachar⁎ Laboratory for Stem Cell Research, Aalborg University, Fredrik Bajers Vej 3B, 9220 Aalborg, Denmark Bioinformatics and Statistical Genetics, Wellcome Trust Centre for Human Genetics, Oxford University, Roosevelt Drive, Oxford, OX3 7BN, UK Genomics, Wellcome Trust Centre for Human Genetics, Oxford University, Roosevelt Drive, Oxford, OX3 7BN, UK

    Article Title: Differential kynurenine pathway metabolism in highly metastatic aggressive breast cancer subtypes: beyond IDO1-induced immunosuppression.
    Article Snippet: .. The data used in this study consists of transcriptomic (cDNA microarray) information processed using the Illumina HT-12 v3 platform (Illumina_Human_WG-v3). ..

    Article Title: Optimization of cDNA microarrays procedures using criteria that do not rely on external standards
    Article Snippet: .. The gene Ube2b was expressed in the opposite direction relative to the cDNA microarray, but in the same direction as on the Illumina platform (higher in AR42J than in NRK52E on Illumina, lower on cDNA). .. The gene Ube2b was expressed in the opposite direction relative to the cDNA microarray, but in the same direction as on the Illumina platform (higher in AR42J than in NRK52E on Illumina, lower on cDNA).

    Article Title: Targeted delivery of small interfering RNA using reconstituted high-density lipoprotein nanoparticles.
    Article Snippet: RNA was extracted (chloroform), precipitated (isopropanol), and purified (75% ethanol). cDNA was generated with 2.0 μg of high-quality RNA using SuperScript-II reverse transcriptase kit (Invitrogen) [40]. .. cDNA microarray was performed using the Illumina platform (Illumina Inc, San Diego, CA) on SKOV3 cells that were treated in 10-cm cell culture plates with either STAT3 (8.0 μg) or control siRNA (8.0 μg) in triplicate using RNAiFect transfection reagent (Qiagen) as per the manufacturer’s recommendations. ..

    Article Title: Optimization of cDNA microarrays procedures using criteria that do not rely on external standards
    Article Snippet: .. Gene symbol cDNA microarray cDNA microarray cDNA microarray Illumina Illumina Illumina Log (to Base 2) Fold Ratio AR42J vs. NRK52E Log (to Base 2) Fold Ratio AR42J vs NRK52E Ica1 2.22 4.65 up-regulated 4.13 17.41 up-regulated c-fos -2.11 4.32 down-regulated -3.15 -8.88 down-regulated Ifrd1 1.79 3.45 up-regulated Btg2 1.54 2.91 up-regulated 1.19 2.28 up-regulated Uhrf 1.02 2.03 up-regulated 0.98 1.97 up-regulated Hoxa2 1.01 2.02 up-regulated Ube2b -0.88 0.54 dow-regulated 0.52 1.43 up-regulated Table S3b: SYBR green-based quantitative real-time PCR Gene symbol ΔΔCt 2- ΔΔCt Identifier UniGene ID Gene Name Fold Change AR42J vs. NRK52E Ica1 -7.29 156.14 up-regulated UI-R-A0-ax-e-06-0-UI Rn.1379 Islet cell autoantigen 1 Fos 5.11 0.03 down-regulated UI-R-C1-lo-f-05-0-UI Rn.103750 FBJ murine osteosarcoma viral oncogene homolog Ifrd1 -4.64 24.88 up-regulated UI-R-A1-ex-e-05-0-UI Rn.3723 Interferon-related developmental regulator 1 Btg2 -4.65 25.05 up-regulated UI-R-A1-ew-d-01-0-UI Rn.27923 B-cell translocation gene 2. anti-proliferative Uhrf1_mapped -3.53 11.52 up-regulated UI-R-E1-fn-h-01-0-UI Rn.54318 Ubiquitin-like. containing PHD and RING finger domains. ..

    Article Title: Emerging systems biology approaches in nanotoxicology: Towards a mechanism-based understanding of nanomaterial hazard and risk.
    Article Snippet: Abbreviations: AOP, adverse outcome pathway; CRP two-dimensional differential in-gel electrophoresis; ENM gene ontology; KEGG, Kyoto Encyclopedia of Genes and Information About a Microarray Experiment; MIAPE, M Proteomics Experiment; MS, mass spectrometry; NGS MWCNT, multi-walled carbon nanotube; NMR, nuclear m observed transcriptomic adverse effect level; OECD, O operation and Development; RNA-Seq, RNA sequencing.. ⁎ Corresponding author at: Division ofMolecular Toxico Medicine, Karolinska Institutet, Nobels väg 13, 171 77 Sto E-mail address: Bengt.Fadeel@ki.se (B. Fadeel).

    Article Title: Optimization of cDNA microarrays procedures using criteria that do not rely on external standards
    Article Snippet: .. 0 60 120 180 Ica1 c-fos Ifrd1 Btg2 Uhrf Hox2a Ube2 Fo ld C ha ng e 0 1 2 3 4 Ica1 c-fos Ifrd1 Btg2 Uhrf Hoxa2 Ube2b Fo ld C ha ng e 0 2 4 6 8 10 12 14 16 18 20 Ica1 c-fos Ifrd1 Btg2 Uhrf Hoxa2 Ube2b Fo ld C ha ng e cDNA microarray qRT-PCR assay Illumina BeadChips ND ND ND Fo ld C ha ng e Fo ld C ha ng e Fo ld C ha ng e Figure S1. ..

    Gene Expression:

    Article Title: Transcriptional signature of human adipose tissue-derived stem cells (hASCs) preconditioned for chondrogenesis in hypoxic conditions.
    Article Snippet: L. Pilgaard, P. Lund, M. Duroux, H. Lockstone, J. Taylor, J. Emmersen, T. Fink, J. Ragoussis, V. Zachar⁎ Laboratory for Stem Cell Research, Aalborg University, Fredrik Bajers Vej 3B, 9220 Aalborg, Denmark Bioinformatics and Statistical Genetics, Wellcome Trust Centre for Human Genetics, Oxford University, Roosevelt Drive, Oxford, OX3 7BN, UK Genomics, Wellcome Trust Centre for Human Genetics, Oxford University, Roosevelt Drive, Oxford, OX3 7BN, UK

    Cell Culture:

    Article Title: Targeted delivery of small interfering RNA using reconstituted high-density lipoprotein nanoparticles.
    Article Snippet: RNA was extracted (chloroform), precipitated (isopropanol), and purified (75% ethanol). cDNA was generated with 2.0 μg of high-quality RNA using SuperScript-II reverse transcriptase kit (Invitrogen) [40]. .. cDNA microarray was performed using the Illumina platform (Illumina Inc, San Diego, CA) on SKOV3 cells that were treated in 10-cm cell culture plates with either STAT3 (8.0 μg) or control siRNA (8.0 μg) in triplicate using RNAiFect transfection reagent (Qiagen) as per the manufacturer’s recommendations. ..

    Control:

    Article Title: Targeted delivery of small interfering RNA using reconstituted high-density lipoprotein nanoparticles.
    Article Snippet: RNA was extracted (chloroform), precipitated (isopropanol), and purified (75% ethanol). cDNA was generated with 2.0 μg of high-quality RNA using SuperScript-II reverse transcriptase kit (Invitrogen) [40]. .. cDNA microarray was performed using the Illumina platform (Illumina Inc, San Diego, CA) on SKOV3 cells that were treated in 10-cm cell culture plates with either STAT3 (8.0 μg) or control siRNA (8.0 μg) in triplicate using RNAiFect transfection reagent (Qiagen) as per the manufacturer’s recommendations. ..

    Transfection:

    Article Title: Targeted delivery of small interfering RNA using reconstituted high-density lipoprotein nanoparticles.
    Article Snippet: RNA was extracted (chloroform), precipitated (isopropanol), and purified (75% ethanol). cDNA was generated with 2.0 μg of high-quality RNA using SuperScript-II reverse transcriptase kit (Invitrogen) [40]. .. cDNA microarray was performed using the Illumina platform (Illumina Inc, San Diego, CA) on SKOV3 cells that were treated in 10-cm cell culture plates with either STAT3 (8.0 μg) or control siRNA (8.0 μg) in triplicate using RNAiFect transfection reagent (Qiagen) as per the manufacturer’s recommendations. ..

    Real-time Polymerase Chain Reaction:

    Article Title: Optimization of cDNA microarrays procedures using criteria that do not rely on external standards
    Article Snippet: .. Gene symbol cDNA microarray cDNA microarray cDNA microarray Illumina Illumina Illumina Log (to Base 2) Fold Ratio AR42J vs. NRK52E Log (to Base 2) Fold Ratio AR42J vs NRK52E Ica1 2.22 4.65 up-regulated 4.13 17.41 up-regulated c-fos -2.11 4.32 down-regulated -3.15 -8.88 down-regulated Ifrd1 1.79 3.45 up-regulated Btg2 1.54 2.91 up-regulated 1.19 2.28 up-regulated Uhrf 1.02 2.03 up-regulated 0.98 1.97 up-regulated Hoxa2 1.01 2.02 up-regulated Ube2b -0.88 0.54 dow-regulated 0.52 1.43 up-regulated Table S3b: SYBR green-based quantitative real-time PCR Gene symbol ΔΔCt 2- ΔΔCt Identifier UniGene ID Gene Name Fold Change AR42J vs. NRK52E Ica1 -7.29 156.14 up-regulated UI-R-A0-ax-e-06-0-UI Rn.1379 Islet cell autoantigen 1 Fos 5.11 0.03 down-regulated UI-R-C1-lo-f-05-0-UI Rn.103750 FBJ murine osteosarcoma viral oncogene homolog Ifrd1 -4.64 24.88 up-regulated UI-R-A1-ex-e-05-0-UI Rn.3723 Interferon-related developmental regulator 1 Btg2 -4.65 25.05 up-regulated UI-R-A1-ew-d-01-0-UI Rn.27923 B-cell translocation gene 2. anti-proliferative Uhrf1_mapped -3.53 11.52 up-regulated UI-R-E1-fn-h-01-0-UI Rn.54318 Ubiquitin-like. containing PHD and RING finger domains. ..

    Translocation Assay:

    Article Title: Optimization of cDNA microarrays procedures using criteria that do not rely on external standards
    Article Snippet: .. Gene symbol cDNA microarray cDNA microarray cDNA microarray Illumina Illumina Illumina Log (to Base 2) Fold Ratio AR42J vs. NRK52E Log (to Base 2) Fold Ratio AR42J vs NRK52E Ica1 2.22 4.65 up-regulated 4.13 17.41 up-regulated c-fos -2.11 4.32 down-regulated -3.15 -8.88 down-regulated Ifrd1 1.79 3.45 up-regulated Btg2 1.54 2.91 up-regulated 1.19 2.28 up-regulated Uhrf 1.02 2.03 up-regulated 0.98 1.97 up-regulated Hoxa2 1.01 2.02 up-regulated Ube2b -0.88 0.54 dow-regulated 0.52 1.43 up-regulated Table S3b: SYBR green-based quantitative real-time PCR Gene symbol ΔΔCt 2- ΔΔCt Identifier UniGene ID Gene Name Fold Change AR42J vs. NRK52E Ica1 -7.29 156.14 up-regulated UI-R-A0-ax-e-06-0-UI Rn.1379 Islet cell autoantigen 1 Fos 5.11 0.03 down-regulated UI-R-C1-lo-f-05-0-UI Rn.103750 FBJ murine osteosarcoma viral oncogene homolog Ifrd1 -4.64 24.88 up-regulated UI-R-A1-ex-e-05-0-UI Rn.3723 Interferon-related developmental regulator 1 Btg2 -4.65 25.05 up-regulated UI-R-A1-ew-d-01-0-UI Rn.27923 B-cell translocation gene 2. anti-proliferative Uhrf1_mapped -3.53 11.52 up-regulated UI-R-E1-fn-h-01-0-UI Rn.54318 Ubiquitin-like. containing PHD and RING finger domains. ..

    Ubiquitin Proteomics:

    Article Title: Optimization of cDNA microarrays procedures using criteria that do not rely on external standards
    Article Snippet: .. Gene symbol cDNA microarray cDNA microarray cDNA microarray Illumina Illumina Illumina Log (to Base 2) Fold Ratio AR42J vs. NRK52E Log (to Base 2) Fold Ratio AR42J vs NRK52E Ica1 2.22 4.65 up-regulated 4.13 17.41 up-regulated c-fos -2.11 4.32 down-regulated -3.15 -8.88 down-regulated Ifrd1 1.79 3.45 up-regulated Btg2 1.54 2.91 up-regulated 1.19 2.28 up-regulated Uhrf 1.02 2.03 up-regulated 0.98 1.97 up-regulated Hoxa2 1.01 2.02 up-regulated Ube2b -0.88 0.54 dow-regulated 0.52 1.43 up-regulated Table S3b: SYBR green-based quantitative real-time PCR Gene symbol ΔΔCt 2- ΔΔCt Identifier UniGene ID Gene Name Fold Change AR42J vs. NRK52E Ica1 -7.29 156.14 up-regulated UI-R-A0-ax-e-06-0-UI Rn.1379 Islet cell autoantigen 1 Fos 5.11 0.03 down-regulated UI-R-C1-lo-f-05-0-UI Rn.103750 FBJ murine osteosarcoma viral oncogene homolog Ifrd1 -4.64 24.88 up-regulated UI-R-A1-ex-e-05-0-UI Rn.3723 Interferon-related developmental regulator 1 Btg2 -4.65 25.05 up-regulated UI-R-A1-ew-d-01-0-UI Rn.27923 B-cell translocation gene 2. anti-proliferative Uhrf1_mapped -3.53 11.52 up-regulated UI-R-E1-fn-h-01-0-UI Rn.54318 Ubiquitin-like. containing PHD and RING finger domains. ..

    Transcriptomics:

    Article Title: Emerging systems biology approaches in nanotoxicology: Towards a mechanism-based understanding of nanomaterial hazard and risk.
    Article Snippet: Abbreviations: AOP, adverse outcome pathway; CRP two-dimensional differential in-gel electrophoresis; ENM gene ontology; KEGG, Kyoto Encyclopedia of Genes and Information About a Microarray Experiment; MIAPE, M Proteomics Experiment; MS, mass spectrometry; NGS MWCNT, multi-walled carbon nanotube; NMR, nuclear m observed transcriptomic adverse effect level; OECD, O operation and Development; RNA-Seq, RNA sequencing.. ⁎ Corresponding author at: Division ofMolecular Toxico Medicine, Karolinska Institutet, Nobels väg 13, 171 77 Sto E-mail address: Bengt.Fadeel@ki.se (B. Fadeel).

    In Vivo:

    Article Title: Emerging systems biology approaches in nanotoxicology: Towards a mechanism-based understanding of nanomaterial hazard and risk.
    Article Snippet: Abbreviations: AOP, adverse outcome pathway; CRP two-dimensional differential in-gel electrophoresis; ENM gene ontology; KEGG, Kyoto Encyclopedia of Genes and Information About a Microarray Experiment; MIAPE, M Proteomics Experiment; MS, mass spectrometry; NGS MWCNT, multi-walled carbon nanotube; NMR, nuclear m observed transcriptomic adverse effect level; OECD, O operation and Development; RNA-Seq, RNA sequencing.. ⁎ Corresponding author at: Division ofMolecular Toxico Medicine, Karolinska Institutet, Nobels väg 13, 171 77 Sto E-mail address: Bengt.Fadeel@ki.se (B. Fadeel).

    Aerosol:

    Article Title: Emerging systems biology approaches in nanotoxicology: Towards a mechanism-based understanding of nanomaterial hazard and risk.
    Article Snippet: Abbreviations: AOP, adverse outcome pathway; CRP two-dimensional differential in-gel electrophoresis; ENM gene ontology; KEGG, Kyoto Encyclopedia of Genes and Information About a Microarray Experiment; MIAPE, M Proteomics Experiment; MS, mass spectrometry; NGS MWCNT, multi-walled carbon nanotube; NMR, nuclear m observed transcriptomic adverse effect level; OECD, O operation and Development; RNA-Seq, RNA sequencing.. ⁎ Corresponding author at: Division ofMolecular Toxico Medicine, Karolinska Institutet, Nobels väg 13, 171 77 Sto E-mail address: Bengt.Fadeel@ki.se (B. Fadeel).

    Cell Differentiation:

    Article Title: Emerging systems biology approaches in nanotoxicology: Towards a mechanism-based understanding of nanomaterial hazard and risk.
    Article Snippet: Abbreviations: AOP, adverse outcome pathway; CRP two-dimensional differential in-gel electrophoresis; ENM gene ontology; KEGG, Kyoto Encyclopedia of Genes and Information About a Microarray Experiment; MIAPE, M Proteomics Experiment; MS, mass spectrometry; NGS MWCNT, multi-walled carbon nanotube; NMR, nuclear m observed transcriptomic adverse effect level; OECD, O operation and Development; RNA-Seq, RNA sequencing.. ⁎ Corresponding author at: Division ofMolecular Toxico Medicine, Karolinska Institutet, Nobels väg 13, 171 77 Sto E-mail address: Bengt.Fadeel@ki.se (B. Fadeel).

    Microinjection:

    Article Title: Emerging systems biology approaches in nanotoxicology: Towards a mechanism-based understanding of nanomaterial hazard and risk.
    Article Snippet: Abbreviations: AOP, adverse outcome pathway; CRP two-dimensional differential in-gel electrophoresis; ENM gene ontology; KEGG, Kyoto Encyclopedia of Genes and Information About a Microarray Experiment; MIAPE, M Proteomics Experiment; MS, mass spectrometry; NGS MWCNT, multi-walled carbon nanotube; NMR, nuclear m observed transcriptomic adverse effect level; OECD, O operation and Development; RNA-Seq, RNA sequencing.. ⁎ Corresponding author at: Division ofMolecular Toxico Medicine, Karolinska Institutet, Nobels väg 13, 171 77 Sto E-mail address: Bengt.Fadeel@ki.se (B. Fadeel).

    Incubation:

    Article Title: Emerging systems biology approaches in nanotoxicology: Towards a mechanism-based understanding of nanomaterial hazard and risk.
    Article Snippet: Abbreviations: AOP, adverse outcome pathway; CRP two-dimensional differential in-gel electrophoresis; ENM gene ontology; KEGG, Kyoto Encyclopedia of Genes and Information About a Microarray Experiment; MIAPE, M Proteomics Experiment; MS, mass spectrometry; NGS MWCNT, multi-walled carbon nanotube; NMR, nuclear m observed transcriptomic adverse effect level; OECD, O operation and Development; RNA-Seq, RNA sequencing.. ⁎ Corresponding author at: Division ofMolecular Toxico Medicine, Karolinska Institutet, Nobels väg 13, 171 77 Sto E-mail address: Bengt.Fadeel@ki.se (B. Fadeel).

    RNA sequencing:

    Article Title: Emerging systems biology approaches in nanotoxicology: Towards a mechanism-based understanding of nanomaterial hazard and risk.
    Article Snippet: Abbreviations: AOP, adverse outcome pathway; CRP two-dimensional differential in-gel electrophoresis; ENM gene ontology; KEGG, Kyoto Encyclopedia of Genes and Information About a Microarray Experiment; MIAPE, M Proteomics Experiment; MS, mass spectrometry; NGS MWCNT, multi-walled carbon nanotube; NMR, nuclear m observed transcriptomic adverse effect level; OECD, O operation and Development; RNA-Seq, RNA sequencing.. ⁎ Corresponding author at: Division ofMolecular Toxico Medicine, Karolinska Institutet, Nobels väg 13, 171 77 Sto E-mail address: Bengt.Fadeel@ki.se (B. Fadeel).

    In Vitro:

    Article Title: Emerging systems biology approaches in nanotoxicology: Towards a mechanism-based understanding of nanomaterial hazard and risk.
    Article Snippet: Abbreviations: AOP, adverse outcome pathway; CRP two-dimensional differential in-gel electrophoresis; ENM gene ontology; KEGG, Kyoto Encyclopedia of Genes and Information About a Microarray Experiment; MIAPE, M Proteomics Experiment; MS, mass spectrometry; NGS MWCNT, multi-walled carbon nanotube; NMR, nuclear m observed transcriptomic adverse effect level; OECD, O operation and Development; RNA-Seq, RNA sequencing.. ⁎ Corresponding author at: Division ofMolecular Toxico Medicine, Karolinska Institutet, Nobels väg 13, 171 77 Sto E-mail address: Bengt.Fadeel@ki.se (B. Fadeel).

    Quantitative RT-PCR:

    Article Title: Optimization of cDNA microarrays procedures using criteria that do not rely on external standards
    Article Snippet: .. 0 60 120 180 Ica1 c-fos Ifrd1 Btg2 Uhrf Hox2a Ube2 Fo ld C ha ng e 0 1 2 3 4 Ica1 c-fos Ifrd1 Btg2 Uhrf Hoxa2 Ube2b Fo ld C ha ng e 0 2 4 6 8 10 12 14 16 18 20 Ica1 c-fos Ifrd1 Btg2 Uhrf Hoxa2 Ube2b Fo ld C ha ng e cDNA microarray qRT-PCR assay Illumina BeadChips ND ND ND Fo ld C ha ng e Fo ld C ha ng e Fo ld C ha ng e Figure S1. ..



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